PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G31560.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 182aa MW: 19337.7 Da PI: 7.595

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G31560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	133.8	5.4e-42	29	122	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +++++lP+an++r+mkkvlP++ ki+ +ak+++++c++ef++fv++eas+k+++e+r+t++++d+l ++++lGf++yv+p+++y++ yre+e++ OGLUM02G31560.1 29 ATNAELPMANLVRLMKKVLPGKVKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFERA 122 68999**************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MAGNKKRGGR NMDQVEKAAV RSDGEGGSAT NAELPMANLV RLMKKVLPGK VKIGGAAKGL 60 THDCAVEFVG FVGDEASEKA KAEHRRTVAP EDYLGSFGDL GFDRYVDPMD AYIHGYREFE 120 RAGGNRRVAP PPPAAATPLT PGGPTFTDAE LQFLRSVIPS RSDDEYSGSS PAIGGYGYGK 180 NM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	2e-25	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G31560.1