PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G31630.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 458aa MW: 50415.4 Da PI: 9.4609

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G31630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	190	207	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ OGLUM02G31630.1 190 RSKHSATEQRRRTKINDR 207 889*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MQLFQGEEPA HDFLSLGAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG 60 RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF 120 AFAPALHGAR VENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS 180 SADQGPSTPR SKHSATEQRR RTKINDRQAS RGLKYFVNSC HTLIRRETKL LSFRRFLQEK 240 VQKYEEADPE RNHEDSKSMP WAKVYYRSCW RNTKNTSQVQ GEDLSPSTQD MNNEQYGPKH 300 ISAAQPALFN TQSVTSTTTS SSHMATGTPQ NLEKNSTPSN QPPWLSMSTM RQESEPGNKM 360 PNKHEKQTLH DENHSISSAY SQGLFNRLTE ALKKSGLDPS QANIAVEINL AKRARDNTSD 420 NSKIVCLIII LYLCPDFTSQ INEDEEPIQI TKRRCNKS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MQLFQGEEPA HDFLSLGAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR VENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRQAS RGLKYFVNSC HTLIRRETKL LSFRRFLQEK  240
VQKYEEADPE RNHEDSKSMP WAKVYYRSCW RNTKNTSQVQ GEDLSPSTQD MNNEQYGPKH  300
ISAAQPALFN TQSVTSTTTS SSHMATGTPQ NLEKNSTPSN QPPWLSMSTM RQESEPGNKM  360
PNKHEKQTLH DENHSISSAY SQGLFNRLTE ALKKSGLDPS QANIAVEINL AKRARDNTSD  420
NSKIVCLIII LYLCPDFTSQ INEDEEPIQI TKRRCNKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	2e-17	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G31630.1