PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G31630.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 491aa MW: 54419.1 Da PI: 8.8744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G31630.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	190	207	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ OGLUM02G31630.2 190 RSKHSATEQRRRTKINDR 207 889*************96 PP
2	HLH	24	6.9e-08	239	271	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++e LrellP+ ++K +Ka+ L +++eYI+ Lq OGLUM02G31630.2 239 RLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 271 5899*****8....8*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MQLFQGEEPA HDFLSLGAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG 60 RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF 120 AFAPALHGAR VENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS 180 SADQGPSTPR SKHSATEQRR RTKINDRQAS RAFNSKTISY KYMVQEMCSK MQFFMLSFRL 240 EILRELLPHT DQKRDKASFL SEVIEYIRFL QEKVQKYEEA DPERNHEDSK SMPWAKVYYR 300 SCWRNTKNTS QVQGEDLSPS TQDMNNEQYG PKHISAAQPA LFNTQSVTST TTSSSHMATG 360 TPQNLEKNST PSNQPPWLSM STMRQESEPG NKMPNKHEKQ TLHDENHSIS SAYSQGLFNR 420 LTEALKKSGL DPSQANIAVE INLAKRARDN TSDNSKIVCL IIILYLCPDF TSQINEDEEP 480 IQITKRRCNK S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MQLFQGEEPA HDFLSLGAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLELAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR VENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRQAS RAFNSKTISY KYMVQEMCSK MQFFMLSFRL  240
EILRELLPHT DQKRDKASFL SEVIEYIRFL QEKVQKYEEA DPERNHEDSK SMPWAKVYYR  300
SCWRNTKNTS QVQGEDLSPS TQDMNNEQYG PKHISAAQPA LFNTQSVTST TTSSSHMATG  360
TPQNLEKNST PSNQPPWLSM STMRQESEPG NKMPNKHEKQ TLHDENHSIS SAYSQGLFNR  420
LTEALKKSGL DPSQANIAVE INLAKRARDN TSDNSKIVCL IIILYLCPDF TSQINEDEEP  480
IQITKRRCNK S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.1	3e-30	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G31630.2