PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G33090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 174aa    MW: 19594.6 Da    PI: 12.0502
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G33090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP55.91.7e-172721483
              TCP 14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83
                     ++g+RdRR+Rls++  + f+d+qd+LG+ ++sk ieWL+ +a  a   l   +  +a +   ++s + s++
  OGLUM02G33090.1  2 SRGLRDRRIRLSVPMSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGRPSEE 72
                     689************************************99988888777776666633333333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MSRGLRDRRI RLSVPMSIAF YDIQDRLGVN RPSKSIEWLI CAALVARLLL RPPQRRPAPH  60
PRRPSSGRPS EEQARMRKAT VAAPPGKWGE KRRKTRSWCA ARKAERIAKL RVWREGWMPR  120
REASTSAALG GQSWIRKPST PGSGDSCSCS DAKTAKRRWA EKVGEVVARE AGSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.29e-15TCP family protein