PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G33770.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 334aa MW: 35234.8 Da PI: 6.7107

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G33770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.4e-14	136	187	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ OGLUM02G33770.1 136 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 187 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MALEAVVFPQ EHLSCAAAMY AAPPSSLGCG VDMDEFEENG GVVLQEEAGA AVHGGGGGGA 60 GGMMSVWVNA ATCARSIAAS GAVEEFWDER QYPVSSPPAA PTPAASGGGG GHAKAAARRR 120 RRRPKVVKNK EEAESQRRNH IAVERNRRRQ MNEYLAVLRS LMPPSYAQRG DQASIVAGAI 180 NFVKELEQLL QSLEAQKRRA EHAPPAPPFA GFFTFPQYST TVGDNNAAGS GAADGEGGCG 240 ARPGAADIEV AMAESHANVR VLAPRRPRQL LRMVVALQCL GLTVLHLNVT TTADHLALYS 300 FSLKMEDECR LSSVDEIAGA VNQMVTKIAG ECIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	RRRRRR
2	138	148	RNHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-53	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G33770.1