PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G35670.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 656aa MW: 72766.6 Da PI: 5.4078

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G35670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	539	586	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I r Rt ++k++w+++ OGLUM02G35670.1 539 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 586 7*************************99999***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MDKIPRLVSS APCAISRLNR GGAPISVWRA EQGEGILVGG PQDALDNRSD DNDFDKNDNS 60 DPVVYQLVRV EGDGTLIPAT EDEVLQFETF LHDEKVDDDL PSIDDVTHVE EYFTNDCIVK 120 KPEFEEGPSK LDTADVQTQK LDAGLEEDRL CTLNDSIVLP SNCSAVHDQQ LDKLNTEQGA 180 NIIAQQDNAS TETTKSTVLN DLSSDKEKAD ACSKPVNEAS AGQSVSGVTS SVPDFSILKG 240 EVCLDDLTMR ELQEAFRATF GRQTTVKDKL WLKRRIAMGL INSCDVPSSG CVVRDYKVIA 300 MGAKQEIPVV EAIPKMELEA NLVRDQVMNP GHERDLPSSL SYHSEEQQRS SKRLKRVPTD 360 NDEPQVTIFA EQGTTKRIRK PTKRYIEELS DIDTHESTGR LSSPGKRHVY DEVLLRPRIA 420 PLHEVDSLST AYPTREDTLG GCSVHVPYVS RMRRGRPRSN FIPFLDPEPS VECTEAPAAD 480 VVNLEKEGER KNHKNTGKKG VHVETSGEKD VQGLQDKDFC DSDDNPKTKR GGKRKHHRAW 540 TLCEVVKLVD GVARYGAGKW SEIRRLAFSS YSYRTSVDLK DKWRNLIRAS QTQLSTENDG 600 VCPRKSNPSA IPIPVSILLR VKKLAEMQSQ AGDVRVPIKF SGQSTTVVQG KVSGFL

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MDKIPRLVSS APCAISRLNR GGAPISVWRA EQGEGILVGG PQDALDNRSD DNDFDKNDNS  60
DPVVYQLVRV EGDGTLIPAT EDEVLQFETF LHDEKVDDDL PSIDDVTHVE EYFTNDCIVK  120
KPEFEEGPSK LDTADVQTQK LDAGLEEDRL CTLNDSIVLP SNCSAVHDQQ LDKLNTEQGA  180
NIIAQQDNAS TETTKSTVLN DLSSDKEKAD ACSKPVNEAS AGQSVSGVTS SVPDFSILKG  240
EVCLDDLTMR ELQEAFRATF GRQTTVKDKL WLKRRIAMGL INSCDVPSSG CVVRDYKVIA  300
MGAKQEIPVV EAIPKMELEA NLVRDQVMNP GHERDLPSSL SYHSEEQQRS SKRLKRVPTD  360
NDEPQVTIFA EQGTTKRIRK PTKRYIEELS DIDTHESTGR LSSPGKRHVY DEVLLRPRIA  420
PLHEVDSLST AYPTREDTLG GCSVHVPYVS RMRRGRPRSN FIPFLDPEPS VECTEAPAAD  480
VVNLEKEGER KNHKNTGKKG VHVETSGEKD VQGLQDKDFC DSDDNPKTKR GGKRKHHRAW  540
TLCEVVKLVD GVARYGAGKW SEIRRLAFSS YSYRTSVDLK DKWRNLIRAS QTQLSTENDG  600
VCPRKSNPSA IPIPVSILLR VKKLAEMQSQ AGDVRVPIKF SGQSTTVVQG KVSGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-79	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G35670.1