PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G35980.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 210aa    MW: 22700.3 Da    PI: 6.6763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G35980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-171667156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ykGVr++k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa   l+g+
  OGLUM02G35980.1 16 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 67
                     59*****998.**********933...5********************98888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSSSPVAAS PPEMEKKYKG VRRRKWGKWV SEIRLPNSRD RIWLGSYDSP EKAARAFDAA  60
FVTLRGHGAA GADLNFPDSP PSCDARSSDP RQVQAAALSH ANRAHVTPQQ AAAALMSPPS  120
LSPPPGFATG SEVVAPAVRA DGSIDWRPVM AHPPPLYSPP GWGGGHAYDF LQPPPPSPPL  180
PSCDDDMVDV VDESSASLWS FDTRDYYFRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-33ERF family protein