PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G37030.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 441aa MW: 44257 Da PI: 5.7964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G37030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	223	268	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OGLUM02G37030.1 223 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 268 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MQPNARQMHG GGGGGGGGGQ DDFFDQMLST LPAVWSELGS GKPAWDLTAG AVGGGGGASD 60 DHSAAAFDDS ALLASRLRQH QIDGGGDKPI MLQLSDLHRH HGLAAGDDSG GAAGFLPLSL 120 FADRSQDDID AAFKSPNGAR GDHALYNGFG AAGMHGAAAM QPPPFGQGGS MPAQSFGGGA 180 AASGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA 240 LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSESNGNG 300 NATSSSGNGE AANGSSNGDN NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL 360 ATAISSATTS SLLPRTGGGA GGSLHEGGNG TSPPLVNGAA TGCDDAGVFF SVKFVVELSF 420 LLLNEDCRGK EESKLLVQKG P

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MQPNARQMHG GGGGGGGGGQ DDFFDQMLST LPAVWSELGS GKPAWDLTAG AVGGGGGASD  60
DHSAAAFDDS ALLASRLRQH QIDGGGDKPI MLQLSDLHRH HGLAAGDDSG GAAGFLPLSL  120
FADRSQDDID AAFKSPNGAR GDHALYNGFG AAGMHGAAAM QPPPFGQGGS MPAQSFGGGA  180
AASGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA  240
LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSESNGNG  300
NATSSSGNGE AANGSSNGDN NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL  360
ATAISSATTS SLLPRTGGGA GGSLHEGGNG TSPPLVNGAA TGCDDAGVFF SVKFVVELSF  420
LLLNEDCRGK EESKLLVQKG P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-40	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G37030.1