PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G38020.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 332aa    MW: 36446.9 Da    PI: 7.6144
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G38020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.28.1e-50101531128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lppGfrF P+deelv++yL++kv +++        +  ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgk
  OGLUM02G38020.1  10 LPPGFRFYPSDEELVCHYLHNKVLNQHrfagvgAAAGGTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 103
                      79**********************999887765444457***************87788999******************************** PP

              NAM  89 dkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      d+ +++           + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OGLUM02G38020.1 104 DRVIHNPklhaaaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 153
                      *****9877776666555555***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVLNQHRFAG VGAAAGGTMV EVDLHTHEPW  60
ELPDVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KLHAAAAAHR  120
RASIVGMRKT LVFYRGRAPN GVKTNWVMHE FRMENPHTPP KEDWVLCRVF YKKKAETETE  180
SSYSMENQQE AVIAMARSAA AIKAGGCYSN SSSSHDPAAA GHHSPPPFPA SLAACSSSHH  240
YSSHPPPPPD HHHHHHMPVT GGGGGSLNEF IPTTSMALYS SIFDFSQHLD GGAVAASASA  300
SAAGSRVDGG EQCGLMELGL EEHYNYNGLM PM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-76NAC family protein