PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G38740.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 216aa    MW: 22457.6 Da    PI: 7.9346
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G38740.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.5e-38211211100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn +kll++lp  +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l+a+
  OGLUM02G38740.1  21 PCGACKFLRRRCVPECVFAPYFSSEQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQ 114
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l +++++
  OGLUM02G38740.1 115 LMQARAQ 121
                      *999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MAGATAAGAA AAAAGTGAGS PCGACKFLRR RCVPECVFAP YFSSEQGAAR FAAIHKVFGA  60
SNASKLLSHL PVADRCEAVV TITYEAQARL RDPVYGCVAQ IFALQQQVAI LQAQLMQARA  120
QLACGIQSSS HSPVSWPDSG SISALLRQDM ARRPPGGALD DCFGGGGALL PELMAAGFKD  180
DVAAVQMQQH CSKAVDAGEL QYLAQAMMRS TSNYSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-45LBD family protein