PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G38880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 612aa MW: 67427.5 Da PI: 4.4275

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G38880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.9	2.1e-49	16	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyW 83 l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp +++++++ +wyfF++ d+k + g+r+nrat +gyW OGLUM02G38880.1 16 LAPGFRFHPTDEELVSYYLRRRILGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGYW 108 579*************************.99***********5448999999*******99777777665567******* PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl OGLUM02G38880.1 109 KTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 152 *******.999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD 60 LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR 120 GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQD LHVVCRIFQK NGSGPQNGAQ 180 YGAPYLEEDW EEEDDAIENM PASGAFAEMA ATQEYQPEIT PVKAQGSNEE TNGGGYSCDV 240 FSLDEILQEP ENVCKNEEQN AIDDKFTIAE LSGYPRQDDG YVGENGPVNW IDPSNGDNTN 300 WPLRAYSTQN HVNGTLSADG FFDTVNGTNS YSGQQQVCPS DNQNLYLQDD GLTSSHQVGD 360 NMPFYDASSN HKWVDGKDDY LNLNDLLYPP AENQPLFDAG DDLMAYFDAT EDDFKFDIMG 420 TEDSNSQLPD MSNFVQKDDN NNKFTLDGIS NTALYGASSS GSHGNMYPDT AVPDMPMDDT 480 VDKSFGKRLA SMLGSIPAPP AMASEFPPST GKSVVPLSAV NPSSSIRVTA GIIQLGGITF 540 TGSTERLQKN GDFNLLLSFT VEGDVSTKSI GFEPDTQMST TPMVLRSGMY LFFVSAMILM 600 LSYKVGLCIY SR

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD  60
LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR  120
GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQD LHVVCRIFQK NGSGPQNGAQ  180
YGAPYLEEDW EEEDDAIENM PASGAFAEMA ATQEYQPEIT PVKAQGSNEE TNGGGYSCDV  240
FSLDEILQEP ENVCKNEEQN AIDDKFTIAE LSGYPRQDDG YVGENGPVNW IDPSNGDNTN  300
WPLRAYSTQN HVNGTLSADG FFDTVNGTNS YSGQQQVCPS DNQNLYLQDD GLTSSHQVGD  360
NMPFYDASSN HKWVDGKDDY LNLNDLLYPP AENQPLFDAG DDLMAYFDAT EDDFKFDIMG  420
TEDSNSQLPD MSNFVQKDDN NNKFTLDGIS NTALYGASSS GSHGNMYPDT AVPDMPMDDT  480
VDKSFGKRLA SMLGSIPAPP AMASEFPPST GKSVVPLSAV NPSSSIRVTA GIIQLGGITF  540
TGSTERLQKN GDFNLLLSFT VEGDVSTKSI GFEPDTQMST TPMVLRSGMY LFFVSAMILM  600
LSYKVGLCIY SR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	2e-59	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G38880.1