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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OGLUM03G00280.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | GRAS | ||||||||
| Protein Properties | Length: 470aa MW: 51018 Da PI: 6.841 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 250.7 | 5.6e-77 | 104 | 469 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLar..lsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
ve+L+++A+ ++gd +a+++Lar ++ + ++++ p+ R a yf+ AL++ l++ v+ +++ p+ + + + +l+a+k+fs++sP+l
OGLUM03G00280.1 104 VEQLVQAAKLTEAGDVLAARHILARpaINYRlPASAAPPLLRSALYFKDALRRALNSDVDDDSSSTPTPPLH--DLLLKLTAYKAFSDLSPLLH 195
689*********************85466656777889*******************888888877777776..69999*************** PP
GRAS 93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
f+h+t+ qa+l++++ + +++H +Dfdi+ G QW++L++ La R + l++T+++ +s+ + el+ +++ L+ fA+ l vpf+f +
OGLUM03G00280.1 196 FAHFTCVQAVLDELAPSascSCIHLLDFDIGVGEQWASLMHDLAHRH-PGVALKVTALNVTASSshhHPLELQLIHDTLSTFAADLSVPFRFAA 288
*************987766799************************6.44799***99886666667999************************ PP
GRAS 181 lvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+ +l++ +l L +v +a+aV+l + + + ++vL+lv++l +++vv v++ +d+++ +F++++l+al+ ++l++sl+
OGLUM03G00280.1 289 F---NLDATDLTPLlAVAAaTDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGARLVVSVDRRCDRGELPFAAHLLQALRSTVSLLESLD 371
7...5555555554255557*********9888887....4....456*********************************************9 PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
a +++s+ +k+Er++++++i+++v ++ +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +
OGLUM03G00280.1 372 AM-GTDSDVVAKIERFWVQPKIQECVRAAVGG---DKTAASAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRGGSLFLHWQRGE 461
98.99*********************988776...688899***************************************************** PP
GRAS 367 LvsvSaWr 374
L s+SaWr
OGLUM03G00280.1 462 LASISAWR 469
*******8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 470 aa Download sequence |
MLGEERRKAS SSFTLTSPGL RPPTHAASTP PPWLVDADHH HDNTFLHWVI NDHHHPLLDL 60 DDVDLDYTKP APSFFADRGL HHHHPASSSF PSPKPTADDN TSTVEQLVQA AKLTEAGDVL 120 AARHILARPA INYRLPASAA PPLLRSALYF KDALRRALNS DVDDDSSSTP TPPLHDLLLK 180 LTAYKAFSDL SPLLHFAHFT CVQAVLDELA PSASCSCIHL LDFDIGVGEQ WASLMHDLAH 240 RHPGVALKVT ALNVTASSSH HHPLELQLIH DTLSTFAADL SVPFRFAAFN LDATDLTPLL 300 AVAAATDAIA VHLPVGSVHA TAVPSVLHLV RRLGARLVVS VDRRCDRGEL PFAAHLLQAL 360 RSTVSLLESL DAMGTDSDVV AKIERFWVQP KIQECVRAAV GGDKTAASAW RATLASAGFV 420 PVQVSSMAEA QAESLLKKLP VRGFRLERRG GSLFLHWQRG ELASISAWRC |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00150.1 | 2e-56 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | OGLUM03G00280.1 |




