PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G01010.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 731aa MW: 77127.6 Da PI: 6.8416

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G01010.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.9	4.4e-31	66	150	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ +t+++f++lea OGLUM03G01010.1 66 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKTYRFFTELEA 150 8******************************************************************97..77778****985 PP
2	trihelix	109.5	2.1e-34	421	506	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+eme+r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a OGLUM03G01010.1 421 RWPKAEVHALIQLRTEMETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 506 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAAEEQL NGSSLEHDGV LGGEEGDRGG 60 SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE 120 NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA 180 GLSALRVHAA PPPPVKQHAA PPPPVMDAAA CVMTMDDVSF SSGSDTEETA EEGGKRKRRG 240 GGGIGGGGGG GKAMRMFEGL MRQVMERQEA MQQRLLEAIE RRDQERMIRE EAWRRQEVAR 300 LAREQDALAQ ERAIAASRDA AVISFIQRVT GQSITAPPPP PLQPTPVASA APPPPPQHHH 360 QQIPPPIQIQ PHHIMPMTPQ PQLQPPQPQS KEASTVVRAA PPPQEQHDTA ASGGGGASSS 420 RWPKAEVHAL IQLRTEMETR YQDSGPKGPL WEDISAGMRR LGYSRSSKRC KEKWENINKY 480 FKKVKESNKK RPEDSKTCPY YHQLDALYRT KAANAAAAAA SASPAPATTT VLAPVPLSQT 540 PPHVDHGGSN GNGNGWASAN NGGGGSSSGG MQTKASNNGT ATAGGLPVVS VAGGNGNGNG 600 VAATTDNKGS KQVPVAKETA GQRQPQPLAM NHNYGNDRMA DDMDSDSMDD DDDDDEFDDD 660 EDDDDDIGGG KMQVQYETSS HFQRPQLQNQ NVVVGRPNAS GGGGGGGAPT TPAGPPPPAA 720 TSGTSFLACV Q

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MQQPGMPPFS AAGGEGAPSP ISSRPPPPEQ AAAAAAEEQL NGSSLEHDGV LGGEEGDRGG  60
SSAGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEEVS RKLAEMGYKR SAKKCREKFE  120
NVDKYYKRTK DGRAGRGDGK TYRFFTELEA LHGAAAATAR PPPVSLAPAP VAVAPPATPA  180
GLSALRVHAA PPPPVKQHAA PPPPVMDAAA CVMTMDDVSF SSGSDTEETA EEGGKRKRRG  240
GGGIGGGGGG GKAMRMFEGL MRQVMERQEA MQQRLLEAIE RRDQERMIRE EAWRRQEVAR  300
LAREQDALAQ ERAIAASRDA AVISFIQRVT GQSITAPPPP PLQPTPVASA APPPPPQHHH  360
QQIPPPIQIQ PHHIMPMTPQ PQLQPPQPQS KEASTVVRAA PPPQEQHDTA ASGGGGASSS  420
RWPKAEVHAL IQLRTEMETR YQDSGPKGPL WEDISAGMRR LGYSRSSKRC KEKWENINKY  480
FKKVKESNKK RPEDSKTCPY YHQLDALYRT KAANAAAAAA SASPAPATTT VLAPVPLSQT  540
PPHVDHGGSN GNGNGWASAN NGGGGSSSGG MQTKASNNGT ATAGGLPVVS VAGGNGNGNG  600
VAATTDNKGS KQVPVAKETA GQRQPQPLAM NHNYGNDRMA DDMDSDSMDD DDDDDEFDDD  660
EDDDDDIGGG KMQVQYETSS HFQRPQLQNQ NVVVGRPNAS GGGGGGGAPT TPAGPPPPAA  720
TSGTSFLACV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	252	RGGGGIGGGGGGGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-47	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G01010.1