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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OGLUM03G01710.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | bHLH | ||||||||
| Protein Properties | Length: 303aa MW: 31733.1 Da PI: 8.2175 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 44.8 | 2.2e-14 | 117 | 168 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+
OGLUM03G01710.1 117 QRMTHIAVERNRRRLMNDHLASLRSLIPSN---YIPRGDQATVVGGAIDYVKQLE 168
79****************************...9*******************96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 303 aa Download sequence |
MEQWAAAAAA AADQAAASAG AGQMPFLALL QGAMEADGGG GGDGRKRHAA AAAFASCCPC 60 PPVADLDLLE SCVTQAAAPP VTAPATRAER RRKRPRPRPR AAPPPEKRKK PEEAENQRMT 120 HIAVERNRRR LMNDHLASLR SLIPSNYIPR GDQATVVGGA IDYVKQLEQQ LVALQAAAAE 180 RSGVGVVATA ATAASDGVFV SPQYTSYSEA RGGSGVDVEA TAAVGGHVRV RVAGRRWTGR 240 LVRAVAAMED LRLTVLHLAV TSVGHDAVVY CFNLKMEEGC EMATADEVAT VVHQIFAYAG 300 ACC |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 90 | 100 | RRRKRPRPRPR |
| 2 | 90 | 110 | RRRKRPRPRPRAAPPPEKRKK |
| 3 | 91 | 111 | RRRKRPRPRPRAAPPPEKRKK |
| 4 | 92 | 98 | RKRPRPR |
| 5 | 92 | 112 | RRRKRPRPRPRAAPPPEKRKK |
| 6 | 93 | 97 | KRPRP |
| 7 | 118 | 129 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G46810.1 | 3e-38 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM03G01710.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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