PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G02750.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 388aa MW: 41597.8 Da PI: 4.7088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G02750.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	182	224	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L OGLUM03G02750.1 182 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 224 79*******************66......**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG GAEARGGMDA 60 SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLTPLRDAM 120 VAEEETSGDK ALLHGGGGSS SPTFMFGGGA GESSEMMAGI RGVGGGVHPR SKLHGTPSKN 180 LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELTERIKT LEEEIGATPE 240 ELDLLNTMKD SSSGNNNEML VRNSTKFDVE KRGSGNTRIE ICCPANPGVL LSTVSALEVL 300 GLEIEQCVVS CFSDFGMQAS CLQEDGKRQV VSTDEIKQTL FRSAGYGGSS GSTSFLNTPE 360 SKLKICSSIV SFAFVNRYGS RPCDLSNI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MELDEESFLD ELMSLRRDGS APWQAPPYPG GGGGGGMMMS DLLFYGGDGG GAEARGGMDA  60
SPFQELASMA APPPQHPHEE FNFDCLSEVC NPYRSCGAQL VPSEAASQTQ TQLTPLRDAM  120
VAEEETSGDK ALLHGGGGSS SPTFMFGGGA GESSEMMAGI RGVGGGVHPR SKLHGTPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELTERIKT LEEEIGATPE  240
ELDLLNTMKD SSSGNNNEML VRNSTKFDVE KRGSGNTRIE ICCPANPGVL LSTVSALEVL  300
GLEIEQCVVS CFSDFGMQAS CLQEDGKRQV VSTDEIKQTL FRSAGYGGSS GSTSFLNTPE  360
SKLKICSSIV SFAFVNRYGS RPCDLSNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	191	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-58	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G02750.1