PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G03420.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 219aa MW: 23353.2 Da PI: 9.02

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G03420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60	3.1e-19	124	157	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR gpdg++tLCnaCG+++++ + OGLUM03G03420.1 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGR 157 *******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MVGDKDAAAL AGELTGDAGA SLNGFFDHTG LEAAVVGEGQ GEGEEEEELE WLSNKDAFPS 60 VDTMAAEVES AAPGAPARAA VGPRTKGLRR RRRVTAPWSL APLLSRPRQA AAAAADAGAP 120 RRRCTHCAVD ETPQWRLGPD GPRTLCNACG VRFKSGRLFP EYRPANSPTF SPLLHSNSHR 180 RVMEMRLQSE EDASAASRVN AKARRAERAA ARLAGKDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	5e-34	GATA family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G03420.1