PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G03870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 1489aa MW: 163187 Da PI: 5.9875

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G03870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	1379	1404	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C+++F +k +L+ H+r+ + OGLUM03G03870.1 1379 FQCDreFCDMTFETKAELRAHQRNiC 1404 899999*****************877 PP
2	zf-C2H2	12.5	0.00043	1404	1426	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H OGLUM03G03870.1 1404 CTdeSCGKRFSSHKYLKRHQCVH 1426 77778***************998 PP
3	zf-C2H2	13.7	0.00019	1462	1488	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ dCg+sF+ s++ rH ++ H OGLUM03G03870.1 1462 YKCSapDCGQSFRYVSDYSRHRKKfnH 1488 99********************98666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1489 aa Download sequence
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC 60 KVIPPHPRPS RRFVFAHLNR SLASSYDAPA PSPAAASDSS IPPSSSSSPP PASAAVFTTR 120 HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFVSKSRAFS KTHLAGLHEP TALAVESLFW 180 KASADRPIYI EYANDVPGSG FAAPVQLQRK KKRKRETAPM DGWEKSSGWR LSNSPWNLQA 240 IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP 300 GDRAVELEEV IRVHGYGGNT DRIGICLILC FFIQILCSCD ASLAVLGEKT TLMSPEVLID 360 NGVPCCRLVQ YPGEFVVTFP RAYHVGFSHG FNCGEAANFA TPQWLKFAKE AAVRRAVMNY 420 LPMLSHQQLL YLLAVSFISR NPRELLSGIR TSRLRDRKKE DRELLVKQEF LQDMISENEL 480 ICSFLGKKSV DNVVLWEPDL LPSLTALHPC SSCSKAPEKK GEDGPRIGST QSSSKDDSSS 540 DGTACMTGTQ SKGLSMDSKQ APEGEKLDTD DGDDLPFDLS IDSGSLTCVA CGILGYPFMA 600 ILQPSRKALE EISLVDKERY KLSCEKEICS NVLPCSPNDG SSGCPLIANR SSSPVENANL 660 SHQDVKPIRS DISLMGKEFN GTLGKHIGTS CSCSSENTID PYGDTETPEK KIPSDCPGSE 720 LSKQSGRGDV NVPDVEGSDE TISWNTGCAF ARPRIFCLQH ALEIEELLAS KGGVHALIIC 780 HADYVKLKAL AISIAEEIEF QFDYKDVALA NASKSDLHLI NISIDDEGYE EEGTDWTSRM 840 GLNLKHSSKI RKETSESQEQ PPLSFWGLFS KPSPISVVSN LKWLCRKART PYKVIGYASS 900 PDVVATPDKV KPAVTETQID TSGNAHENIG SEQTLQQDCV LQESNDVADM CKRPKVNDQD 960 GHSLINIPIA VAEYPMMHQV CERPDSPTTV AVSAGKPTRE QCGAESTELS TVQQFLDNGL 1020 IAEGGSMNFI SNHEHLESDN ATSVCKDEQL QVQQDQLAMV LCNNPNTELV AGELHGGAAS 1080 STLENEDSCG NTSYYSDTVL KNSKPDTDDQ PETCDRSVVL VTPKSSCDQM ISSSDRSCSL 1140 TLDCPVSTDA AFSSEKLSMA HDLMGSELQA VHNSKAEVAA SLTDVKGAKL NSIHTAQLPH 1200 ESPSSDFIIS EGSQSASATA IPRKNGTSMH TESNSIDILL GVLADESKVS SGKDEVGKAS 1260 LTLMTLAGND QSADDVTQDE VAEITDTSHG FCASDIVSRS IGSSNRTNII CYARRKHKRK 1320 SGSEFNINSP QSLGSFVRSP CESLRPRTRP AIVEDMTNET KTAEASTANK RKKAKVEAFQ 1380 CDREFCDMTF ETKAELRAHQ RNICTDESCG KRFSSHKYLK RHQCVHRDER PFKCPWDGCP 1440 MTFKWLWAQT EHIRVHTGER PYKCSAPDCG QSFRYVSDYS RHRKKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 1489 aa Download sequence

MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLASSYDAPA PSPAAASDSS IPPSSSSSPP PASAAVFTTR  120
HQELGNPRRG RPTPQVLKQV WQSGERYTLD QFVSKSRAFS KTHLAGLHEP TALAVESLFW  180
KASADRPIYI EYANDVPGSG FAAPVQLQRK KKRKRETAPM DGWEKSSGWR LSNSPWNLQA  240
IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP  300
GDRAVELEEV IRVHGYGGNT DRIGICLILC FFIQILCSCD ASLAVLGEKT TLMSPEVLID  360
NGVPCCRLVQ YPGEFVVTFP RAYHVGFSHG FNCGEAANFA TPQWLKFAKE AAVRRAVMNY  420
LPMLSHQQLL YLLAVSFISR NPRELLSGIR TSRLRDRKKE DRELLVKQEF LQDMISENEL  480
ICSFLGKKSV DNVVLWEPDL LPSLTALHPC SSCSKAPEKK GEDGPRIGST QSSSKDDSSS  540
DGTACMTGTQ SKGLSMDSKQ APEGEKLDTD DGDDLPFDLS IDSGSLTCVA CGILGYPFMA  600
ILQPSRKALE EISLVDKERY KLSCEKEICS NVLPCSPNDG SSGCPLIANR SSSPVENANL  660
SHQDVKPIRS DISLMGKEFN GTLGKHIGTS CSCSSENTID PYGDTETPEK KIPSDCPGSE  720
LSKQSGRGDV NVPDVEGSDE TISWNTGCAF ARPRIFCLQH ALEIEELLAS KGGVHALIIC  780
HADYVKLKAL AISIAEEIEF QFDYKDVALA NASKSDLHLI NISIDDEGYE EEGTDWTSRM  840
GLNLKHSSKI RKETSESQEQ PPLSFWGLFS KPSPISVVSN LKWLCRKART PYKVIGYASS  900
PDVVATPDKV KPAVTETQID TSGNAHENIG SEQTLQQDCV LQESNDVADM CKRPKVNDQD  960
GHSLINIPIA VAEYPMMHQV CERPDSPTTV AVSAGKPTRE QCGAESTELS TVQQFLDNGL  1020
IAEGGSMNFI SNHEHLESDN ATSVCKDEQL QVQQDQLAMV LCNNPNTELV AGELHGGAAS  1080
STLENEDSCG NTSYYSDTVL KNSKPDTDDQ PETCDRSVVL VTPKSSCDQM ISSSDRSCSL  1140
TLDCPVSTDA AFSSEKLSMA HDLMGSELQA VHNSKAEVAA SLTDVKGAKL NSIHTAQLPH  1200
ESPSSDFIIS EGSQSASATA IPRKNGTSMH TESNSIDILL GVLADESKVS SGKDEVGKAS  1260
LTLMTLAGND QSADDVTQDE VAEITDTSHG FCASDIVSRS IGSSNRTNII CYARRKHKRK  1320
SGSEFNINSP QSLGSFVRSP CESLRPRTRP AIVEDMTNET KTAEASTANK RKKAKVEAFQ  1380
CDREFCDMTF ETKAELRAHQ RNICTDESCG KRFSSHKYLK RHQCVHRDER PFKCPWDGCP  1440
MTFKWLWAQT EHIRVHTGER PYKCSAPDCG QSFRYVSDYS RHRKKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	215	QRKKKRKR
2	209	215	RKKKRKR
3	209	216	RKKKRKRE
4	1314	1320	RRKHKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G03870.1