PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G05180.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 362aa MW: 39365.5 Da PI: 6.9045

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G05180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	130	183	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k OGLUM03G05180.1 130 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 183 4568999**********************************************9 PP
2	HD-ZIP_I/II	128.9	2e-41	129	220	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e+ OGLUM03G05180.1 129 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIV 220 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHGHHHE QQQQQQHHHH 60 LGPPPPPPPH PHNPFLPSSA QCPSLQEFRG MAPMLGKRPM SYGDGGGGGD EVNGGGEDEL 120 SDDGSQAGEK KRRLNVEQVR TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA 180 RWKTKQLEKD YDALKRQLDA VKAENDALLN HNKKLQAEIV ALKGREAASE LINLNKETEA 240 SCSNRSENSS EINLDISRTP PPDAAALDAA PTAHHHHHGG GGGGGMIPFY TSIARPASGG 300 GVDIDQLLHS SSGGAGGPKM EHHGGGGNVQ AASVDTASFG NLLCGVDEPP PFWPWPDHQH 360 FH

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHGHHHE QQQQQQHHHH  60
LGPPPPPPPH PHNPFLPSSA QCPSLQEFRG MAPMLGKRPM SYGDGGGGGD EVNGGGEDEL  120
SDDGSQAGEK KRRLNVEQVR TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA  180
RWKTKQLEKD YDALKRQLDA VKAENDALLN HNKKLQAEIV ALKGREAASE LINLNKETEA  240
SCSNRSENSS EINLDISRTP PPDAAALDAA PTAHHHHHGG GGGGGMIPFY TSIARPASGG  300
GVDIDQLLHS SSGGAGGPKM EHHGGGGNVQ AASVDTASFG NLLCGVDEPP PFWPWPDHQH  360
FH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-70	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G05180.1