PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06210.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 237aa    MW: 26568.6 Da    PI: 9.7246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06210.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17137227199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v +  +l lp++f+e++  k   +  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL +gD  vF+l++ ++f  +v
  OGLUM03G06210.1 137 FVKPMLHSHVVRGFWLGLPRHFCETYLPK--HDAIVTLLDEKDEQFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLVKPTTF--KV 222
                      89************************422..4568***************..566555..9**********************9986666..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  OGLUM03G06210.1 223 HIIRA 227
                      99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA VAPKTPSPMK QKRRRIIEAA  60
VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA  120
RKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDEQF  180
DTNYLAYKNG LSGGWAGFAL DHGLLDGDAT VFQLVKPTTF KVHIIRATVD DGNEVTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-48B3 family protein