PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G06890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 74aa MW: 7916.98 Da PI: 8.103

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G06890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	34.8	5.7e-11	34	74	5	45
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45 k ++++ h+kv+ + R+R+ + a +F+L +eLG+++d+ OGLUM03G06890.1 34 KPPSKDCHSKVDTLGCRIRMHIIYTAHIFQLNRELGHKSDG 74 8899***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence
MTKVHGDGGG GAALDKQLVP DASNDNGTAF AICKPPSKDC HSKVDTLGCR IRMHIIYTAH 60 IFQLNRELGH KSDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	7e-17	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G06890.1