PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G07180.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 546aa MW: 56947.4 Da PI: 8.5509

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G07180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OGLUM03G07180.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	13.2	0.00027	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OGLUM03G07180.1 134 WKCDKCSKKYAVQSDWKAHTKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MEVETSSGTA ERGAGAGAQQ QPPPQPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG 120 IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHTKTCGSRE YRCDCGTLFS RRDSFITHRA 180 FCDALAEESA KARAAPPPPA DEDGTSASAG APPPQAPLPP PAPVPAPAPP PPPAAAPAPA 240 AQPEQRDRDA ALDQFATPAP PPPPVTAPPP PPVAAPNDCV SSSSSGVAPT SQSLLSSMFA 300 PPSVAQAPQY ADPIGVGAGG HQERAVPAKP PALCLAPNAS SSLFTAPVPA DRQQFAPPPP 360 PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS SAPPSSSGQQ QQHHHHHHQE 420 TMQVPLPASS LPEWPPRLQP EPSPMLSSGL GLGLPYDATG GPVSLPELMM GQSTLFSAKP 480 ATLDFLGLGV SPTGASTSRG FPTFIQPIGG AVSLAGSATV AAETFGAAHG GQANPWERNP 540 SSSPIL

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MEVETSSGTA ERGAGAGAQQ QPPPQPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG  120
IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHTKTCGSRE YRCDCGTLFS RRDSFITHRA  180
FCDALAEESA KARAAPPPPA DEDGTSASAG APPPQAPLPP PAPVPAPAPP PPPAAAPAPA  240
AQPEQRDRDA ALDQFATPAP PPPPVTAPPP PPVAAPNDCV SSSSSGVAPT SQSLLSSMFA  300
PPSVAQAPQY ADPIGVGAGG HQERAVPAKP PALCLAPNAS SSLFTAPVPA DRQQFAPPPP  360
PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS SAPPSSSGQQ QQHHHHHHQE  420
TMQVPLPASS LPEWPPRLQP EPSPMLSSGL GLGLPYDATG GPVSLPELMM GQSTLFSAKP  480
ATLDFLGLGV SPTGASTSRG FPTFIQPIGG AVSLAGSATV AAETFGAAHG GQANPWERNP  540
SSSPIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-95	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G07180.1