PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G07230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 247aa    MW: 26664 Da    PI: 6.9419
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G07230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.3e-1969122356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  OGLUM03G07230.1  69 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 122
                      56689***********************************************99 PP
2HD-ZIP_I/II113.61.3e-3669159292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +L+e+l+
  OGLUM03G07230.1  69 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 159
                      9**************************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MSREEDEKLL FPSFAFPAEC FPEAATSGGE QKKARQRRRR KVKPEAAAAA AAAAAAALAG  60
ESGGDEQAKK RRLSDEQARF LEMSFKKERK LETPRKVQLA AELGLDAKQV AVWFQNRRAR  120
HKSKLMEEEF AKLRSAHDAV VLQNCHLETE LLKLKERLAD VEEEKAKLAA VAAATTGGGG  180
GGGGGSSSPS SSSFSTVTYH PALAGQFGVE AVAEEADLTY MSEYAYNSYM LELAAAGYCG  240
GVYDQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16990KKRRLSDEQARFLEMSFKKERK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-29HD-ZIP family protein