PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G08850.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 888aa MW: 99387.1 Da PI: 5.1268

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G08850.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.2	3.3e-19	71	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+G++F+Ptd++l+ +L+++v + + + +e+ik+vd +++P+d+p ++++ yfF+k+ k+ a++ +++ ++ W+ OGLUM03G08850.1 71 LPRGVEFNPTDSDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECANE--NSKCIR---WQ 155 699**********.789999988886776442..233554443333899***.666777789**9999864..444445... PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++g+ +++ +g+l g+k+++v+y + + ++++ tdW +h+y++ OGLUM03G08850.1 156 KSGNPISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 200 ********.999******97767888889*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAAAEDS 60 GGAAQQGWPG LPRGVEFNPT DSDLLWHLAA EVGNGQARRH PFINEFIKSV DETIGFGYTH 120 PQDIPGIRQD GCASYFFHKN FKECANENSK CIRWQKSGNP ISITLDGNLQ GCKEVFVLYA 180 YETDGNNPQI TDWRLHQYHI ESTEKDEGEL VVSKIFYELE KNQFKWAEKS HAQSAQGASA 240 IDDDSKEELQ LDNHSFNMIT ENSSVQGNEN KRKQTQTGTC PNLDKLSYFN VVSNMHIENQ 300 INDHDEIEEL DHMSLQERYR ILMAENHSSS AVVSSEQCAI DGLENSCKPG TNGMIPKRIH 360 EGTAFRDGMY SMLQGISSAP AIIGSIDNDN NRRLLTEGLS NNQQSHEAGC ESGFLSTSSS 420 AAPPQCQVVC SHDLLVNSKT LIYSRDPSSS STPTFGDKNI QLEGTDDRTL LVDVKLEPAL 480 EGDFTEKITS SVQRKDPNHG TEGSNLVGSI NSVSSAISKR ISEAARSNPE NSHVEGLLPS 540 SRIKSEVTGS ELPLVVCGLT SISIAELTAK KTNTLNHDGV LAYCSRKRKR RKTLRDPSEK 600 TLEEDSLRND EGTAYFSRQR RRRKTATDSI ETALEEDAPG LLQILLDKGI LVKEIKLYGV 660 EEEDDMVPDC TESDFQDLEN VITKLFPQRT SLLKSALRHE KGEKAIYCLT CLISLIEQSR 720 YLQFRDCPVE WGWCRDLQSF IFIFKSHNRI VLERPEYGYA TYFFEIVKSL PIQWQIQRMV 780 TAMKLSGCGR TALIENRPLL IGEDLTEGEA RVLEEYGWVP NSGLGTMLNY RDRVVHDRWN 840 ERSGTDWKTK IGKLLMNGYS EGHLVLSHFP TKVGKIEDDT EIKQEDPL

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence

MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAAAEDS  60
GGAAQQGWPG LPRGVEFNPT DSDLLWHLAA EVGNGQARRH PFINEFIKSV DETIGFGYTH  120
PQDIPGIRQD GCASYFFHKN FKECANENSK CIRWQKSGNP ISITLDGNLQ GCKEVFVLYA  180
YETDGNNPQI TDWRLHQYHI ESTEKDEGEL VVSKIFYELE KNQFKWAEKS HAQSAQGASA  240
IDDDSKEELQ LDNHSFNMIT ENSSVQGNEN KRKQTQTGTC PNLDKLSYFN VVSNMHIENQ  300
INDHDEIEEL DHMSLQERYR ILMAENHSSS AVVSSEQCAI DGLENSCKPG TNGMIPKRIH  360
EGTAFRDGMY SMLQGISSAP AIIGSIDNDN NRRLLTEGLS NNQQSHEAGC ESGFLSTSSS  420
AAPPQCQVVC SHDLLVNSKT LIYSRDPSSS STPTFGDKNI QLEGTDDRTL LVDVKLEPAL  480
EGDFTEKITS SVQRKDPNHG TEGSNLVGSI NSVSSAISKR ISEAARSNPE NSHVEGLLPS  540
SRIKSEVTGS ELPLVVCGLT SISIAELTAK KTNTLNHDGV LAYCSRKRKR RKTLRDPSEK  600
TLEEDSLRND EGTAYFSRQR RRRKTATDSI ETALEEDAPG LLQILLDKGI LVKEIKLYGV  660
EEEDDMVPDC TESDFQDLEN VITKLFPQRT SLLKSALRHE KGEKAIYCLT CLISLIEQSR  720
YLQFRDCPVE WGWCRDLQSF IFIFKSHNRI VLERPEYGYA TYFFEIVKSL PIQWQIQRMV  780
TAMKLSGCGR TALIENRPLL IGEDLTEGEA RVLEEYGWVP NSGLGTMLNY RDRVVHDRWN  840
ERSGTDWKTK IGKLLMNGYS EGHLVLSHFP TKVGKIEDDT EIKQEDPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	586	591	RKRKRR
2	586	592	RKRKRRK
3	587	592	KRKRRK
4	608	621	RNDEGTAYFSRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-39	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G08850.1