PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09560.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 767aa MW: 83130.3 Da PI: 5.3174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09560.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.3e-11	594	642	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OGLUM03G09560.3 594 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 642 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR 60 SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG 120 AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT 180 KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT 240 LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD 300 EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD 360 LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG 420 NYMQKPVTQP GRWLIILVFH SLLCQYITIG LSLLWYHLVD LVQMYSPPCS AAASSQGHCF 480 AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI DKCLKGSKRK 540 GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG QATNSHSLAE 600 RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSTISPELN 660 SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC VPNPADVHLA 720 RAAHLASFPQ QRGLIWDEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR  60
SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG  120
AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT  180
KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT  240
LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD  300
EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD  360
LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG  420
NYMQKPVTQP GRWLIILVFH SLLCQYITIG LSLLWYHLVD LVQMYSPPCS AAASSQGHCF  480
AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI DKCLKGSKRK  540
GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG QATNSHSLAE  600
RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSTISPELN  660
SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC VPNPADVHLA  720
RAAHLASFPQ QRGLIWDEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-45	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G09560.3