 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM03G10640.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | NF-YC | ||||||||
| Protein Properties | Length: 307aa MW: 32501.8 Da PI: 7.1272 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 168.9 | 6.1e-53 | 106 | 211 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89
ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f
OGLUM03G10640.1 106 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 199
89*****997665555689*************************************************************************** PP
NF-YC 90 dflvdivprdel 101
dflvdivpr+e
OGLUM03G10640.1 200 DFLVDIVPREEA 211
*********986 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 307 aa Download sequence |
MDRPHPAVAG AVVPKSKQRI ISISEKTKPG HECALSRISP SSFLILRHST HSYKSTVIKV 60 TMDNQQLPYA GQPAAAGAGA PVPGVPGAGG APAVPHHHLL QQQQAQLQAF WAYQRQEAER 120 ASASDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI RSWLHAEENK 180 RRTLQRNDVA AAIARTDVFD FLVDIVPREE AKEEPGSALG FAAGGPAGAV GAAGPAAGLP 240 YYYPPMGQPA PMMPAWHVPA WDPAWQQGAA PDVDQGAAGS FSEEGQQGFA GHGGAAAGFP 300 PAPPSSE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 181 | 187 | RRTLQRN |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G63470.2 | 9e-63 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | OGLUM03G10640.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|