PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G10640.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 268aa MW: 28370.9 Da PI: 5.5297

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G10640.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.3	4.5e-53	67	172	1	101
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f OGLUM03G10640.3 67 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 160 89***997665555689*********************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivpr+e OGLUM03G10640.3 161 DFLVDIVPREEA 172 *******986 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MWSNEALEHS THSYKSTVIK VTMDNQQLPY AGQPAAAGAG APVPGVPGAG GAPAVPHHHL 60 LQQQQAQLQA FWAYQRQEAE RASASDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK 120 ACELFILELT IRSWLHAEEN KRRTLQRNDV AAAIARTDVF DFLVDIVPRE EAKEEPGSAL 180 GFAAGGPAGA VGAAGPAAGL PYYYPPMGQP APMMPAWHVP AWDPAWQQGA APDVDQGAAG 240 SFSEEGQQGF AGHGGAAAGF PPAPPSSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRTLQRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-63	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G10640.3