PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G12700.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 167aa MW: 16974.5 Da PI: 7.9188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G12700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	28	50	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H OGLUM03G12700.1 28 FECKTCNRQFPSFQALGGHRASH 50 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MARILLLFSG AHGGGGGAAA ASPPERMFEC KTCNRQFPSF QALGGHRASH KKPRLADGDP 60 AAEAPAKPKV HGCSICGLEF AVGQALGGHM RRHRAVMADG LGLGLSLGLG IGVVGQSDDG 120 GGKKKAAAAA AAELVFDLNA PAIEEEPDRA RPAGLAVEFP VVVDFPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	4e-27	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G12700.1