PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G13830.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 268aa    MW: 28953.8 Da    PI: 9.6873
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G13830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.72.9e-082194270
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                     W++ e+ aL++a   ++ r   g l+ ++W++ ++++     +++   r+  qCk++++ l+kr k+++ ++k+
  OGLUM03G13830.1 21 WSDGETSALLDAWGPRHIRAAGGPLRTADWRACAAAVtarraAAGRAPRTVDQCKNRLDYLKKRLKAERSRSKG 94
                     *************************************9999888889********************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRHIRA AGGPLRTADW RACAAAVTAR  60
RAAAGRAPRT VDQCKNRLDY LKKRLKAERS RSKGAPAPPP PPPSVDRLRA LLRLAPSVPP  120
GFTSRGGAMP KVGEEEQEEE EEKAESFAAP LPRSWPSVPK RPRTAVALLP LSSSSGHQHG  180
DGGVTPCTEV AAALDRLAGT YERVEVAKQK EATRLEERRL EAMRDLEIER MRILVDVAIS  240
ASAVADTATA ASSSWLAAMQ DERLDCLN