PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G16080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 358aa MW: 39101.2 Da PI: 5.8096

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G16080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee+v++yL++k+ +++++ vi +vd++k+ePw+Lp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++ OGLUM03G16080.1 21 LPPGFRFHPTDEEIVSHYLTPKALNHRFSS-GVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFR 113 79***********************999.99***********988999************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfy grap+gekt Wvmhe+rle OGLUM03G16080.1 114 GRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 148 ******************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MSEVSVMAEV EETAAAAALD LPPGFRFHPT DEEIVSHYLT PKALNHRFSS GVIGDVDLNK 60 CEPWHLPAMA KMGEKEWYFF CHKDRKYPTG TRTNRATESG YWKATGKDKE IFRGRGILVG 120 MKKTLVFYLG RAPRGEKTGW VMHEFRLEGK LPSQLPRSAK DQWAVCKVFN KELALAAKNG 180 PMAVTGATAD DAGIERVGSF SFLSDFIDPA ELPPLMDPSF VADIDGVDDA KVSASTSGQA 240 AVAAGFHVAS QVMSYQQVKM EEPLPLPYLH QQPPRMLHSG QYFSLPAVHP GDLTPSAIRR 300 YCKAEQVSGQ TSALSASRDT GLSTDPNAAG CAEISSAPTS QPFPEFDDAI LGLDDFWN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MSEVSVMAEV EETAAAAALD LPPGFRFHPT DEEIVSHYLT PKALNHRFSS GVIGDVDLNK  60
CEPWHLPAMA KMGEKEWYFF CHKDRKYPTG TRTNRATESG YWKATGKDKE IFRGRGILVG  120
MKKTLVFYLG RAPRGEKTGW VMHEFRLEGK LPSQLPRSAK DQWAVCKVFN KELALAAKNG  180
PMAVTGATAD DAGIERVGSF SFLSDFIDPA ELPPLMDPSF VADIDGVDDA KVSASTSGQA  240
AVAAGFHVAS QVMSYQQVKM EEPLPLPYLH QQPPRMLHSG QYFSLPAVHP GDLTPSAIRR  300
YCKAEQVSGQ TSALSASRDT GLSTDPNAAG CAEISSAPTS QPFPEFDDAI LGLDDFWN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	7e-92	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G16080.1