PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G16500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 484aa MW: 52664.6 Da PI: 9.4596

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G16500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.2	8.8e-11	99	122	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OGLUM03G16500.1 99 EPDCSYYMRTGLCRFGMTCKFNHP 122 789********************8 PP
2	zf-CCCH	38.7	1.7e-12	144	168	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OGLUM03G16500.1 144 QPECQYYLKTGTCKFGATCKFHHPR 168 799********************96 PP
3	zf-CCCH	36.5	8.4e-12	190	214	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OGLUM03G16500.1 190 EKECAYYLRTGQCKFGSTCKFHHPQ 214 679********************97 PP
4	zf-CCCH	39.4	1e-12	351	376	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OGLUM03G16500.1 351 DQPECQFYMKTGDCKFGAVCKFHHPK 376 689*********************96 PP
5	zf-CCCH	38.3	2.3e-12	396	422	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OGLUM03G16500.1 396 PGEPICTFYSRYGICKFGPNCKFDHPM 422 5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MTWRPLVILS GARPGPSPSA VKAPVDWVGW RGRAAVKKSG EGRRGTKTTG CPNGDASFLS 60 FPFLPPSSAS ASSSSALTPA RMNLGEAMEA GPYPERIGEP DCSYYMRTGL CRFGMTCKFN 120 HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA TCKFHHPREK AAMATRVQLN 180 ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV AVRGSVYSPG QSVTSPSQHT 240 YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV PGWNPYAAQI GSSSSDDQQR 300 TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV QRESIFPERP DQPECQFYMK 360 TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI CTFYSRYGIC KFGPNCKFDH 420 PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR SRRITHSDSQ QIPSGERGTE 480 REAS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MTWRPLVILS GARPGPSPSA VKAPVDWVGW RGRAAVKKSG EGRRGTKTTG CPNGDASFLS  60
FPFLPPSSAS ASSSSALTPA RMNLGEAMEA GPYPERIGEP DCSYYMRTGL CRFGMTCKFN  120
HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA TCKFHHPREK AAMATRVQLN  180
ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV AVRGSVYSPG QSVTSPSQHT  240
YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV PGWNPYAAQI GSSSSDDQQR  300
TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV QRESIFPERP DQPECQFYMK  360
TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI CTFYSRYGIC KFGPNCKFDH  420
PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR SRRITHSDSQ QIPSGERGTE  480
REAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-152	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G16500.1