PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G16500.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 384aa MW: 41634 Da PI: 8.0786

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G16500.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.6e-11	59	82	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ OGLUM03G16500.3 59 EPDCSYYMRTGLCRFGMTCKFNHP 82 789********************8 PP
2	zf-CCCH	39.1	1.3e-12	104	128	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OGLUM03G16500.3 104 QPECQYYLKTGTCKFGATCKFHHPR 128 799********************96 PP
3	zf-CCCH	39.8	7.6e-13	251	276	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OGLUM03G16500.3 251 DQPECQFYMKTGDCKFGAVCKFHHPK 276 689*********************96 PP
4	zf-CCCH	38.7	1.7e-12	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ OGLUM03G16500.3 296 PGEPICTFYSRYGICKFGPNCKFDHPM 322 5799*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP 60 DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA 120 TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QWPGHSSYAQ VIVPPGLVQV 180 PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV 240 QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI 300 CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR 360 SRRITHSDSQ QIPSGERGTE REAS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QWPGHSSYAQ VIVPPGLVQV  180
PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV  240
QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI  300
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR  360
SRRITHSDSQ QIPSGERGTE REAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-137	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G16500.3