PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G17210.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 26102.3 Da    PI: 6.5475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G17210.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-1966115255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g
  OGLUM03G17210.1  66 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRG 115
                      69*******.**********843...4*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MCGGAIPLIS SRGPGGKRSL SAADELWPPP QQHASDDPAE QAAADEEEQE QQPAARRQRR  60
GERRTLYRGI RRRPWGKWAA EIRDPAKGAR VWLGTFATAE AAARAYDRAA RRIRGTKAKV  120
NFPNEDNAFA AAPPPYHLAA YYGDASSTSY LYPMAMTPAA AGLREQQLMT TTAEYSVNDA  180
VDVASVYFQP PPPAVAYEFS AVGGGAVVVP VSAVAPAMTY GQSQEVAAPL MWNFDDITAM  240
PM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15674RRQRRGERRTLYRGIRRRP
25977RRQRRGERRTLYRGIRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-21ERF family protein