PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G19270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 258aa    MW: 28611.9 Da    PI: 9.7587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G19270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.4e-11132183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      +WT+eEd  l+++ ++ G ++W+++a+ m         +R++ qc++rw  +
  OGLUM03G19270.1 132 AWTPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrRRRSPGQCRDRWSEH 183
                      7************************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MAASAMKLAM AVACALALAS ACHGLQLGYY KQSCPHVEAI VRDEVKKFVY KDAGIGAGLI  60
RLVFHDCFVE QPATEKKIDV IAMALQGMEQ EAAGQPPASA AFPSSAEEAA AAAASPTSGG  120
KRIVLRIRLP PAWTPEEDAC LARLAAENGF RHWRRVAEGM AAARSGRRRR RSPGQCRDRW  180
SEHLARDVYH RPFTADDDAE LARLLLKRDG ERSWKDIGRA AYCRTSRGMR RRWRELRDSD  240
AFLRKLWCPP PPPMQPSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-06MYB family protein