PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G19940.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 253aa MW: 28124.7 Da PI: 5.7675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G19940.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00013	37	86	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L OGLUM03G19940.2 37 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 86 678899*********************997....57788899999888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MVPTERGDVA TAIRPAAADK LVHGPISDKK CRKKVPRKVH KSEREKLKRG HLNDLFGELG 60 NMLEADRQSN GKACILTDTT RILRDLLSQV KYLRQENNTL QNESNYVTME RNELQDENGA 120 LRSEISDLQN ELRMRATGSP GWGHGTTGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL 180 QQPLPQPTVI EPSSARQPLE LKLFLEAPPA EDPEPSEDQE APNNVARPQP RYPTEASSWP 240 ISLGLPRMED EQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	2e-28	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G19940.2