PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G20490.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 1031aa MW: 115308 Da PI: 6.3767

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G20490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.9	1.3e-55	22	137	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 + +krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqr OGLUM03G20490.1 22 EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQR 115 459***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlLee++++ivlvhylevk OGLUM03G20490.1 116 RTYWLLEEDFTHIVLVHYLEVK 137 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence
MAETRKFLMP NQPPDISQMV LEARKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL 60 FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL 120 LEEDFTHIVL VHYLEVKGVK QSFSRAKEEI MQLSGADSPS CSNSITSQNQ MTPQIMDAAE 180 SPISGQISEY EGAEPAKFGA ADNCRASSRY NPLIEMQQPL DGIVMDSILY PSASAICNQV 240 SGYHGELPPG TSNLNGHMFT HSDIARMFDD SSSGLRDISR TLFDSMPYDE HLSGYANGFM 300 EPTLHSSFSM IEANNLEDSS LLETFTSEAL YTNNLSQKEA DALSFAGISS PEVNGNKYTE 360 GSTKHPLLKQ LSLDLFKIES SGLKKHDSFS RWMSKELGEV VDLGIKSSSD ALWSSIEIVN 420 AADGPSAPIN EQLDAYAVSP SLAQDQLFSI LDISPSCSYI GLKTKVLVTG TFLASKENVE 480 NCKWSCMFGD VEVPAEVLAD GSLRCYAPEH QSGRVPFYVT CSNRIACSEV REFEYRDSDA 540 QYMETSHSQA NGINEMHLQI RLEKLLSLGP DDNQLLVCGN EKLELINAIN SLMLDEKWSD 600 QGSPSGSKDV VTPRNQSLKK LMKEKLHCWL IYKINDCEKG PNILGKEGQG IIHLVAALGF 660 DWAIRPILVA GVNVNFRDAH GWTALHWAAS CGRERTVGVL IANGAAAGAL TDPTSEFPSG 720 RTPADLASTN GHKGIAGFLA ESALTSHLSA LSLKDSKDSN VEEARGLTIP EDLPEMYSGQ 780 LAVQDSHAES LKDSLNAVRK SAQAAARIFQ AFRVESFHRK KVVEYGDDDC GLSDEHTFSL 840 ISLQKVKQGQ HDTRLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKNYKK 900 VVWSVGIVEK VILRWRRKGR GLRGFRPEKQ LEGQTQIQPA KTEDEYDYLQ DGRRQAEGRL 960 QRALDRVRSM TQYPEAREQY RRLTTCVAEM QQSRMMQDEM LSEAAGADGS DFMNGLEDLI 1020 CRDDPQMSAI W

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence

MAETRKFLMP NQPPDISQMV LEARKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL  60
FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGVK QSFSRAKEEI MQLSGADSPS CSNSITSQNQ MTPQIMDAAE  180
SPISGQISEY EGAEPAKFGA ADNCRASSRY NPLIEMQQPL DGIVMDSILY PSASAICNQV  240
SGYHGELPPG TSNLNGHMFT HSDIARMFDD SSSGLRDISR TLFDSMPYDE HLSGYANGFM  300
EPTLHSSFSM IEANNLEDSS LLETFTSEAL YTNNLSQKEA DALSFAGISS PEVNGNKYTE  360
GSTKHPLLKQ LSLDLFKIES SGLKKHDSFS RWMSKELGEV VDLGIKSSSD ALWSSIEIVN  420
AADGPSAPIN EQLDAYAVSP SLAQDQLFSI LDISPSCSYI GLKTKVLVTG TFLASKENVE  480
NCKWSCMFGD VEVPAEVLAD GSLRCYAPEH QSGRVPFYVT CSNRIACSEV REFEYRDSDA  540
QYMETSHSQA NGINEMHLQI RLEKLLSLGP DDNQLLVCGN EKLELINAIN SLMLDEKWSD  600
QGSPSGSKDV VTPRNQSLKK LMKEKLHCWL IYKINDCEKG PNILGKEGQG IIHLVAALGF  660
DWAIRPILVA GVNVNFRDAH GWTALHWAAS CGRERTVGVL IANGAAAGAL TDPTSEFPSG  720
RTPADLASTN GHKGIAGFLA ESALTSHLSA LSLKDSKDSN VEEARGLTIP EDLPEMYSGQ  780
LAVQDSHAES LKDSLNAVRK SAQAAARIFQ AFRVESFHRK KVVEYGDDDC GLSDEHTFSL  840
ISLQKVKQGQ HDTRLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKNYKK  900
VVWSVGIVEK VILRWRRKGR GLRGFRPEKQ LEGQTQIQPA KTEDEYDYLQ DGRRQAEGRL  960
QRALDRVRSM TQYPEAREQY RRLTTCVAEM QQSRMMQDEM LSEAAGADGS DFMNGLEDLI  1020
CRDDPQMSAI W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G20490.1