PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G20780.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 409aa    MW: 44815.5 Da    PI: 6.2894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G20780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000263583971054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  OGLUM03G20780.1 358 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 397
                      9******************97...333..3458999999999999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MSRRKACVAA GAFPSEGADK RSRAAPHALA HGYPGSMRWL ALSVDIFRKG ISLNLYCRSL  60
KFGIEDLVAG IAVWVSVVAW QFFQGERAGV LMVWQPVAQT RFRVFKHENG IAVRVIACFQ  120
PSQDCQAEYF RHLLKPKILF AGCFLMGEKV NPWCHWSNPP WTESSANNLH PPDVSLDNTN  180
SVALPTYLNS DGYIYSGVAA SMPSIAASGT LDTVPELQGS NETNVTDVGA QNTECMHENT  240
EEIDALLCSD SDEGCLKVQE LNNRVRKYPM QNDTMSVESV ASAGASQPAK KRRLSSGTDR  300
SVVDTASSAR PDHSVDQKHL SHDDDAQSCC IGEVESDHQF ALREGEEAEG DDGPDDRKRR  360
RERIQETVAA LRKIVPGGIA KDATAVLDEA ICYLKYLKLK VKTLGAVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357361RKRRR