PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G20780.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 526aa MW: 57535.2 Da PI: 7.9284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G20780.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00032	475	514	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L OGLUM03G20780.2 475 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 514 9******************97...333..3458999999999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSRRKACVAA GAFPSEGADK RSRAAPHALA VSLSLSLSRP RLGLAVRLSL VSNSTRRGRP 60 PLQFLRLWPG RVCECSAPIA DSSSSSSSSC SIWSNMHGYP GSMRWLALSV DIFRKGISLN 120 LYCRSLKFGI EDLVAGIAVW VSVVAWQFFQ GERAGVLMVW QPVAQTRFRV FKHENGIAVR 180 VIACFQPSQD CQAEYFRHLL KPKILFAGCF LMGEKVNPWC HWSNPPWTES SANNLHPPDV 240 SLDNTNSVAL PTYLNSDGYI YSGVAASMPS IAASVTDRPV SFSSRFVTTL VPSVGLSTAE 300 TLRKRPLVFF HNVNNTFTVG PLLSKGTLDT VPELQGSNET NVTDVGAQNT ECMHENTEEI 360 DALLCSDSDE GCLKVQELNN RVRKYPMQND TMSVESVASA GASQPAKKRR LSSGTDRSVV 420 DTASSARPDH SVDQKHLSHD DDAQSCCIGE VESDHQFALR EGEEAEGDDG PDDRKRRRER 480 IQETVAALRK IVPGGIAKDA TAVLDEAICY LKYLKLKVKT LGAVSL

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSRRKACVAA GAFPSEGADK RSRAAPHALA VSLSLSLSRP RLGLAVRLSL VSNSTRRGRP  60
PLQFLRLWPG RVCECSAPIA DSSSSSSSSC SIWSNMHGYP GSMRWLALSV DIFRKGISLN  120
LYCRSLKFGI EDLVAGIAVW VSVVAWQFFQ GERAGVLMVW QPVAQTRFRV FKHENGIAVR  180
VIACFQPSQD CQAEYFRHLL KPKILFAGCF LMGEKVNPWC HWSNPPWTES SANNLHPPDV  240
SLDNTNSVAL PTYLNSDGYI YSGVAASMPS IAASVTDRPV SFSSRFVTTL VPSVGLSTAE  300
TLRKRPLVFF HNVNNTFTVG PLLSKGTLDT VPELQGSNET NVTDVGAQNT ECMHENTEEI  360
DALLCSDSDE GCLKVQELNN RVRKYPMQND TMSVESVASA GASQPAKKRR LSSGTDRSVV  420
DTASSARPDH SVDQKHLSHD DDAQSCCIGE VESDHQFALR EGEEAEGDDG PDDRKRRRER  480
IQETVAALRK IVPGGIAKDA TAVLDEAICY LKYLKLKVKT LGAVSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	478	RKRRR

Link Out ? help Back to Top
Ensembl	OGLUM03G20780.2