PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G20780.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 460aa MW: 50432.1 Da PI: 6.9254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G20780.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	409	448	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L OGLUM03G20780.3 409 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 448 9******************97...333..3458999999999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MSRRKACVAA GAFPSEGADK RSRAAPHALA HGYPGSMRWL ALSVDIFRKG ISLNLYCRSL 60 KFGIEDLVAG IAVWVSVVAW QFFQGERAGV LMVWQPVAQT RFRVFKHENG IAVRVIACFQ 120 PSQDCQAEYF RHLLKPKILF AGCFLMGEKV NPWCHWSNPP WTESSANNLH PPDVSLDNTN 180 SVALPTYLNS DGYIYSGVAA SMPSIAASVT DRPVSFSSRF VTTLVPSVGL STAETLRKRP 240 LVFFHNVNNT FTVGPLLSKG TLDTVPELQG SNETNVTDVG AQNTECMHEN TEEIDALLCS 300 DSDEGCLKVQ ELNNRVRKYP MQNDTMSVES VASAGASQPA KKRRLSSGTD RSVVDTASSA 360 RPDHSVDQKH LSHDDDAQSC CIGEVESDHQ FALREGEEAE GDDGPDDRKR RRERIQETVA 420 ALRKIVPGGI AKDATAVLDE AICYLKYLKL KVKTLGAVSL

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MSRRKACVAA GAFPSEGADK RSRAAPHALA HGYPGSMRWL ALSVDIFRKG ISLNLYCRSL  60
KFGIEDLVAG IAVWVSVVAW QFFQGERAGV LMVWQPVAQT RFRVFKHENG IAVRVIACFQ  120
PSQDCQAEYF RHLLKPKILF AGCFLMGEKV NPWCHWSNPP WTESSANNLH PPDVSLDNTN  180
SVALPTYLNS DGYIYSGVAA SMPSIAASVT DRPVSFSSRF VTTLVPSVGL STAETLRKRP  240
LVFFHNVNNT FTVGPLLSKG TLDTVPELQG SNETNVTDVG AQNTECMHEN TEEIDALLCS  300
DSDEGCLKVQ ELNNRVRKYP MQNDTMSVES VASAGASQPA KKRRLSSGTD RSVVDTASSA  360
RPDHSVDQKH LSHDDDAQSC CIGEVESDHQ FALREGEEAE GDDGPDDRKR RRERIQETVA  420
ALRKIVPGGI AKDATAVLDE AICYLKYLKL KVKTLGAVSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	412	RKRRR

Link Out ? help Back to Top
Ensembl	OGLUM03G20780.3