PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G21860.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 345aa MW: 36596.6 Da PI: 4.8317

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G21860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv +++++G g W + +++ g++R++k+c++rw++yl OGLUM03G21860.1 14 RGAWTAMEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	30.8	6.9e-10	67	113	1	47
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W+t +++ gRt++++k++w++ OGLUM03G21860.1 67 RGNISGDEEELILRLHTLLGNRpcmYWST--GRLP-GRTDNEIKNYWNST 113 6777889********************...*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SGDEEELILR LHTLLGNRPC MYWSTGRLPG RTDNEIKNYW NSTLSKRVAM 120 QRTAAATSMP AAATTSSNAD AAGAAARRRR SPEPRTVVVS PIRTKALRCN NNSSSGIVVV 180 QQAGACSHGG RPPESGAPGD AAADKVATPQ AVQQQQQQQQ QELAGADDDD DLPVPAVCID 240 LDLDDIELGG LDGFLISPWR GGGHDDDNAA AAGAVPNLPM PIGYELGGGG GGGGEAGAVD 300 LEALLGQLDA GEDDDGDHHH HQQEEVPSSL GDEDDDYLEL APWLL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI SGDEEELILR LHTLLGNRPC MYWSTGRLPG RTDNEIKNYW NSTLSKRVAM  120
QRTAAATSMP AAATTSSNAD AAGAAARRRR SPEPRTVVVS PIRTKALRCN NNSSSGIVVV  180
QQAGACSHGG RPPESGAPGD AAADKVATPQ AVQQQQQQQQ QELAGADDDD DLPVPAVCID  240
LDLDDIELGG LDGFLISPWR GGGHDDDNAA AAGAVPNLPM PIGYELGGGG GGGGEAGAVD  300
LEALLGQLDA GEDDDGDHHH HQQEEVPSSL GDEDDDYLEL APWLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-52	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G21860.1