PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G21860.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 354aa MW: 37738 Da PI: 4.9234

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G21860.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv +++++G g W + +++ g++R++k+c++rw++yl OGLUM03G21860.2 14 RGAWTAMEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	45.5	1.8e-14	67	122	1	47
TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ tW++Ia +++ gRt++++k++w++ OGLUM03G21860.2 67 RGNISGDEEELILRLHTLLGNRprrfynydllTWSLIAGRLP-GRTDNEIKNYWNST 122 6777889*********************************.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SGDEEELILR LHTLLGNRPR RFYNYDLLTW SLIAGRLPGR TDNEIKNYWN 120 STLSKRVAMQ RTAAATSMPA AATTSSNADA AGAAARRRRS PEPRTVVVSP IRTKALRCNN 180 NSSSGIVVVQ QAGACSHGGR PPESGAPGDA AADKVATPQA VQQQQQQQQQ ELAGADDDDD 240 LPVPAVCIDL DLDDIELGGL DGFLISPWRG GGHDDDNAAA AGAVPNLPMP IGYELGGGGG 300 GGGEAGAVDL EALLGQLDAG EDDDGDHHHH QQEEVPSSLG DEDDDYLELA PWLL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI SGDEEELILR LHTLLGNRPR RFYNYDLLTW SLIAGRLPGR TDNEIKNYWN  120
STLSKRVAMQ RTAAATSMPA AATTSSNADA AGAAARRRRS PEPRTVVVSP IRTKALRCNN  180
NSSSGIVVVQ QAGACSHGGR PPESGAPGDA AADKVATPQA VQQQQQQQQQ ELAGADDDDD  240
LPVPAVCIDL DLDDIELGGL DGFLISPWRG GGHDDDNAAA AGAVPNLPMP IGYELGGGGG  300
GGGEAGAVDL EALLGQLDAG EDDDGDHHHH QQEEVPSSLG DEDDDYLELA PWLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G21860.2