PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G23340.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 200aa MW: 21352.2 Da PI: 8.8608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G23340.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H +H OGLUM03G23340.1 48 FRCSVCGKAFPSHQALGGHKASH 70 89*************99998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MVTNMTHDDY VSLCLMALAQ AGVGGQWPAQ KQQIDMAPPA PERELLRFRC SVCGKAFPSH 60 QALGGHKASH RKPPTAALPM HVIDAPLPPS AEETASSSTT TTTSGGGRHR CSVCHRTFAT 120 GQALGGHKRC HYWDGLSVVS VTASASGSGS SSVRNFDLNL KPVPETVAAG VKRWGEEEEV 180 QSPLPFKKRR LSSPSLELNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04340.1	1e-31	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G23340.1