PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G23890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 194aa MW: 20922.9 Da PI: 11.3534

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G23890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	17	111	1	86
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k++tp+dv+k++rlv+pk++ae+h + +++ t ++++ s + + +++sg++ t+ ++Fv+++gL++gD+vvF++ OGLUM03G23890.1 17 FEKAMTPNDVGKLNRLVVPKQHAEKHfplrrtsfD-ASATAAAATCNSTRACSSTSRTARgrCGGSGTHARTAARSRFVREKGLRAGDTVVFSR 109 99***********************99998852.33344566666666666666664444566677**********************96 PP -S CS B3 85 dg 86 + OGLUM03G23890.1 110 SA 111 64 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MGARTQPTPS WAREPLFEKA MTPNDVGKLN RLVVPKQHAE KHFPLRRTSF DASATAAAAT 60 CNSTRACSST SRTARGRCGG SGTHARTAAR SRFVREKGLR AGDTVVFSRS AYGPDKLLFI 120 DCKKNNTAAA TGDEKPITSG EAARVGRLFG MDITGGGGNF RKRERAVEMG QEAFLMKRQC 180 VVHQRTPALG ALLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	2e-22	RAV family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G23890.1