PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G24530.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15245.6 Da    PI: 7.257
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G24530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.1e-122311342
                     HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42
                     f kR++ ++KKA+ELS+L +++++v+++++
  OGLUM03G24530.1  2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31
                     89**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMKD QYENTTNLEG FLKQRIANLQ  60
EKVDKAKHEN DELETKLLLL NSLDGCLPSL VGLTVKQITS LNSMVEERLK KLRGNGLLAT  120
PVPTSNQDVA SATNIQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.14e-07M-type_MADS family protein