PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G25950.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 782aa    MW: 88811.9 Da    PI: 5.97
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G25950.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.82.7e-913606961338
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+avs ++++la+ +L+ ++++asp+gd  qRla +++  L  rl++++s++y+++ +++ +   +++ l+++++   ++P+l+ s
  OGLUM03G25950.1 360 LRTLLIDCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN---VKDILKVFHVCLSTCPFLRAS 450
                      6789*********************************************************999998887...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h   N++I++  +g+ +vHiiDf+i  G+QWp+L+++La+ ++gpp+lRiTg++ pesg     + +++g rLa++A+++++pfe++ + ++++
  OGLUM03G25950.1 451 HYFSNRTIVDVSKGKPQVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSNKW 544
                      **********************************************************999999************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e+l++++++++++E+l+Vn++++++ l de+ s++s+r++vL++++ ++Pkv+v    + +++ + Fl+rf e +++y +lfd+l++++pr++e
  OGLUM03G25950.1 545 EALSPKDFNIEKDEVLIVNCIYRMKDLGDETISINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNE 638
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                      +r+ +Er + +    nv+aceg er+er e+++kW+ r  +aG+ ++pl+  ++ + +
  OGLUM03G25950.1 639 TRMIIERDIYQYIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQ 696
                      ********999999***********************************998887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    
MSASQNLHRL PEFCVIPATA CSREPGLPRI VVRSNMGSDD NKRFDDFHVI TNGPGSDAYS  60
NEESINLDSY IAPSTSFCSK IYNPQLYVEK GNGTTDWCQT SGGDYPEKSS INSDITLSYI  120
DKILMQEDID DRGNEDTALQ AMEEPFYELL GEKYPAFPQQ QPLCVCDHLQ NLSANTDKSN  180
GHACNTWSVT RMTNISSSMN SNGNFQGFQF PWSLSSITRE TEQFTHHSNR MVVGLKVDGL  240
SISEKPSQDN CSLQIDAHYM RKHPLFEVHD RKSSPCIEDL DLLEGRSNKQ YAIYYDEPIR  300
DEMFDNVLLC SDHKPLDEGV SLSRAMTNNS SKSSQIGQGK TSARRKTTGK RIQKRDVVDL  360
RTLLIDCAQA VSVSNHSLAS DILKIIRHHA SPTGDDSQRL ALCLAYCLDV RLTGTGSQIY  420
HKFITKRRNV KDILKVFHVC LSTCPFLRAS HYFSNRTIVD VSKGKPQVHI IDFGICFGFQ  480
WPSLFEELAK IEDGPPKLRI TGIELPESGF RPYARSNNIG LRLADYAKTF NIPFEYQHIS  540
SNKWEALSPK DFNIEKDEVL IVNCIYRMKD LGDETISINS ARSRVLNTIR MMKPKVFVQG  600
VLNGSYGVPF FLTRFKEVMY HYNSLFDMLD KNIPRDNETR MIIERDIYQY IMLNVIACEG  660
PERIERPESY KKWKVRNLKA GLVQLPLNPA IVRETQDMSS DQASIRLCLV CYGNIYDSYH  720
VSGDTREVSC DTYQVSDDSY HVSGDTREIS CDTYQVSDDF YHVSGDTCEI SDDTYRISGD  780
SY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-128GRAS family protein