PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27050.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 33744.3 Da    PI: 5.0769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-102372771055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+A++Y+k Lq
  OGLUM03G27050.1 237 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAMHYVKFLQ 277
                      9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MESGGVIAEA GWSSLDMSSQ AEESEMMAQL LGTCFPSNGE DDHHQELPWS VDTPSAYYLH  60
CNGGSSSAYS STTSSNSASG SFTLIAPRSE YEGYYVSDSN EAALRISIQE QGAAQFMDAI  120
LNRNGDLGFD DLADSSVNLL DSIGASNKRK IQEQGRLDDQ TKSRKSAKKA GSKRGKKAAQ  180
CEGEDGSIAV TNRQSLRCCT SENDSIGSQE SPVAAKSNGK AQSGHRSATD PQSLYARKRR  240
ERINERLKIL QNLVPNGTKV DISTMLEEAM HYVKFLQLQI KLLSSDEMWM YAPIAYNGMN  300
IGIDLNLSQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-49bHLH family protein