PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G27090.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 526aa MW: 54691.1 Da PI: 8.7187

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G27090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.3	4.4e-35	48	102	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ OGLUM03G27090.1 48 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 102 579*************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MPGQVMEAAL QQLPASMASG SLLLPPACLQ HPLPAAAAAS GGVGGSSREQ CPRCASHDTK 60 FCYYNNYNTS QPRHFCRACR RYWTLGGSLR NVPIGGSTRK RPRPPVRRPP VHFAAASAPP 120 HHHHHHHGGP LTPPPATSSS SQQAGLLGSL FALGAAPLLE GRVGVGFDLG LGLPGPGHHH 180 AVAGGGGPAA AVATSSSSAA AAPLLWPTGL LDSSSNNAET WRMAAGGMWP EFTAAAAAAQ 240 IESVADDSAN SVQNIRLVID IGDTTIQVPL NGPTVVQNIG RQAAAAVAGD SSAGGVSEKT 300 GGAGGGGGEE WMQEQDGLLC MRGWLMALAT LFAAMAQRCG RRGGCLPRPR DWFAALLAAD 360 PAAAAVTRDQ AGKAMLYLIV NTCTFATSLA VLPDAARCRQ RLRVEEGHRE ADHQHDDGRR 420 AVRRGDVRAL RRRRLPAHGP FVGTVVAAVT VVVVRCNLAL PFRGGDAGHG CSWTGIKEDT 480 IEMLLPSSVV RACNPSCGGR ELAGFGCCWG IEVYTRYFSP GSRAGC

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MPGQVMEAAL QQLPASMASG SLLLPPACLQ HPLPAAAAAS GGVGGSSREQ CPRCASHDTK  60
FCYYNNYNTS QPRHFCRACR RYWTLGGSLR NVPIGGSTRK RPRPPVRRPP VHFAAASAPP  120
HHHHHHHGGP LTPPPATSSS SQQAGLLGSL FALGAAPLLE GRVGVGFDLG LGLPGPGHHH  180
AVAGGGGPAA AVATSSSSAA AAPLLWPTGL LDSSSNNAET WRMAAGGMWP EFTAAAAAAQ  240
IESVADDSAN SVQNIRLVID IGDTTIQVPL NGPTVVQNIG RQAAAAVAGD SSAGGVSEKT  300
GGAGGGGGEE WMQEQDGLLC MRGWLMALAT LFAAMAQRCG RRGGCLPRPR DWFAALLAAD  360
PAAAAVTRDQ AGKAMLYLIV NTCTFATSLA VLPDAARCRQ RLRVEEGHRE ADHQHDDGRR  420
AVRRGDVRAL RRRRLPAHGP FVGTVVAAVT VVVVRCNLAL PFRGGDAGHG CSWTGIKEDT  480
IEMLLPSSVV RACNPSCGGR ELAGFGCCWG IEVYTRYFSP GSRAGC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	104	KRPRP
2	419	435	RRAVRRGDVRALRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-23	Dof family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G27090.1