PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27120.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 522aa    MW: 59862.1 Da    PI: 8.6737
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15361171198
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++ +++p kf++++gg+   s t++l++++g  + v++  +k+++++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +f+
  OGLUM03G27120.1  36 DSRRSMIMPCKFVNHFGGD--FSGTIKLQSPNGILYVVEV--TKCKNKTVLRCGWEAFVDAHHIEENDSLLFRRVENSRF--EVLIFD 117
                      45566999*****888999..7779***************..*******************************8888888..888887 PP
2B338.42.1e-122373191798
                      E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                      v++  +ae h   +++s+t+tl+   ++++W  ++  rk  ++ +l++ W eFvk+n+++e D++ F  +++  ++f+++v+++r
  OGLUM03G27120.1 237 VISFCYAEVHF--PHKSVTVTLQRpCKSKKWHPRFYKRKDARMNILRGSWVEFVKDNRVQEQDICAFVPTKDarRNFTFTVHLLR 319
                      33333344443..56899******5677*******77888889************************966442577888887776 PP
3B344.82.2e-144305071090
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + ++++l l  +fa++  ++ ++  + ++ +++g++W   +++r + +r ++ +GW +Fv++n+L++ D+++F+++ +++ 
  OGLUM03G27120.1 430 SASRCQLELGARFAAAVHLPDRR--QTVVLQRRGERWATVMQIRSGTRRLLI-SGWHRFVRDNRLRVEDICLFEFKTHERW 507
                      345599********999888655..3666778*********88888877655.5********************8755444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    
MAGSGSCMKK SCVCCQKYLE HLDGKMNCFV RRMTADSRRS MIMPCKFVNH FGGDFSGTIK  60
LQSPNGILYV VEVTKCKNKT VLRCGWEAFV DAHHIEENDS LLFRRVENSR FEVLIFDSDD  120
CEKVFSCAGI RNTCKSIQEK SSSSCDDTAE SSESEGFARN QKGSFSHRED SPSEHESVES  180
GDLETSQEPY VLSRRSYLSE FQKEKVDALI QEIQPETTAF VAIMRKSNVQ LPTPFLVISF  240
CYAEVHFPHK SVTVTLQRPC KSKKWHPRFY KRKDARMNIL RGSWVEFVKD NRVQEQDICA  300
FVPTKDARRN FTFTVHLLRV AAAYSRGGTI VDRAGSSLGR TDVKSASEIS IKEEPIDQEE  360
NVSSRNRNGV SDESEEDEDS EGPAHPPYIV PCKSRLSRLQ KKIVEEKVRS IQSKFPVYVA  420
IMKKSNVERS ASRCQLELGA RFAAAVHLPD RRQTVVLQRR GERWATVMQI RSGTRRLLIS  480
GWHRFVRDNR LRVEDICLFE FKTHERWRLT MAVHAIFREQ CC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-16B3 family protein