PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27140.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1176aa    MW: 133738 Da    PI: 9.008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27140.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.6e-16126207997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  OGLUM03G27140.2 126 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 207
                      333.456********888877..899****************..*********************************99999..66655 PP
2B3611.9e-19339438198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  OGLUM03G27140.2 339 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 430
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  OGLUM03G27140.2 431 GATVHLLR 438
                      66777666 PP
3B350.15.1e-16514596890
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l++++++
  OGLUM03G27140.2 514 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFELMNDERA 596
                      555555112346689***999.3444455566777899*******..77777779*************************988766 PP
4B355.21.3e-17661745598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F ++++s+f   v +++
  OGLUM03G27140.2 661 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFCHIENSRF--AVLILD 745
                      4..5556655.***********999..888****************..********************************999999..777766 PP
5B344.52.7e-14863961399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f+ 
  OGLUM03G27140.2 863 TTMKHSNVNSHyASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDVCIFHLKnFNgRKFRA 954
                      78889999998889********8887..557789999985778*******77888888*************************98666688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  OGLUM03G27140.2 955 TVHLLRE 961
                      8888875 PP
6B355.31.2e-1710791172899
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
               B3    8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93  
                       s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  OGLUM03G27140.2 1079 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMT 1166
                       55555522345899*****993.33344.5555554999*******..777776689***********************996644555677 PP

                       EEEE-S CS
               B3   94 vkvfrk 99  
                       v+++r+
  OGLUM03G27140.2 1167 VHIIRH 1172
                       777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1176 aa     Download sequence    
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL  60
NELARPRGRG FSLICITISS WNFCSVCKVH MYGWTRFQKK KSCDWSKRYV DHLNGKMKCF  120
HLQMSANFGH SMTIPNKFLD HFGGTLSRTI ELVSPKGIVY IVKVTEHMNK TILQCGWEAF  180
VDAHHIEEND SLLFRHIENS RFEVLILDSD GCEKVFTCAG IKKTSSVQER NAAPVDISRS  240
THDETTQSSG SKKFVRCQRA SDSQRGKTAK LAETSSSGES GEEGTDSSTS EDESSYELDD  300
PQMPPGRNYV LSRWTSLSEA QEEKVDMLVQ DIQPEIPVFV AIMKHSNVNS RRACLVIPKR  360
YASAHFPLES QTITLQRQGK NKKWYPMFYI RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF  420
HLTKFTGGEF GATVHLLRET KSGSLGSFHT SHKRFDLRDG RTWPKVTGAR RVSSRPYLTA  480
DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ  540
TLTLLMTGKS NAWQVKMRPR SGDAQMITTG WRHFVHDNHL QIEDICLFEL MNDERASLGL  600
GKLGTHQASS STSGPEKRNC CSGKSPFKTT IPNPEMKKYC DCCKRYVDHS NGKMKCFHRQ  660
MSANFEHSMI IPNKFLDQFG GKISRTVELE SPKGNVYVVK VSKHMNKTVL QCGWEAFVDA  720
HQIEENDSLL FCHIENSRFA VLILDSDGCE KVFSCSGKRR ASGVQERNAD PIDVSSSTHN  780
DTAQSSGGER FARSESGSDS QHREEAKESS SSEHESSYDL VDPQIAPMPG YVLSRGTNLS  840
EAHEEKLDML VHEIRPEIPL YVTTMKHSNV NSHYASLVIA KHYACAYFPR TSQTITLKWH  900
GKNRKWHPKF YIRKDQVGYI LHGRWIDFVR HNHVKEGDVC IFHLKNFNGR KFRATVHLLR  960
ETIPHSFGEL HIPKRFESRN GRMRLKMTDD RRVSSTECRR GTMEPSTTNV KKEADNEQCN  1020
NGQGKRQEPL NFDVSVGSSK PYLTADRVSL TEEQFRKVEE NVHSIQSEGP IYVSIMNKSN  1080
VGTDGLYIIT LGRQFATRYL PEGEQTLTLL TTGTGKAWQV KMRPRSGDAR MFTLGWRDFV  1140
RDNRLQTEDI CLFQLMKNSE RGLAMTVHII RHSERS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein