PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27210.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 173aa    MW: 19924.1 Da    PI: 10.2427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27210.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-14911721599
                      -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  OGLUM03G27210.1  91 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 172
                      566788888666431....2225555.55*********996655554555.********************99887888888888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS RTDLTRLQKN  60
ILTEKVKAIN SETPIYGYVM NNSSIHGIPC TVEISKKYAD VYLPFEDGTV VLQHHGKSWN  120
VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII RRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-12B3 family protein