PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 884aa    MW: 96189.2 Da    PI: 6.545
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-1858115457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OGLUM03G27880.1  58 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 115
                      6789****************************************************97 PP
2START174.37.5e-552064132204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l
  OGLUM03G27880.1 206 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIEL 298
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+
  OGLUM03G27880.1 299 IYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 392
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  OGLUM03G27880.1 393 LYESPKILAQKMTIAALRHIR 413
                      ****************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    
MTRRRPWPWL LASAEAGEEG EGSTGMAAAM VAAVHGVGRQ DRSSPGGGGA PQVDTGKYVR  60
YTPEQVEALE RVYGECPKPS SLRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS  120
RLQTVNRKLT AMNKLLMEEN DRLQKQVSRL VYENGYMRQQ LHNPSVATTD TSCESVVTSG  180
QHHQQQNPAA TRPQRDANNP AGLLAIAEET LAEFLSKATG TAVDWVQMVG MKPGPDSIGI  240
IAVSHNCSGV AARACGLVSL EPTKVAEILK DRPSWYRDCR CVDVLHVIPT GNGGTIELIY  300
MQTYAPTTLA APRDFWILRY TSGLEDGSLV ICERSLTQST GGPSGPNTPN FVRAEVLPSG  360
YLIRPCEGGG SMIHIVDHVD LDAWSVPEVL RPLYESPKIL AQKMTIAALR HIRQIAHESS  420
GEMPYGGGRQ PAVLRTFSQR LSRGFNDAVN GFPDDGWSLM SSDGAEDVTI AFNSSPNKLV  480
GSHVNSSQLF SAIGGGILCA KASMLLQNVP PALLVRFLRE HRSEWADPGV DAYSAAALRA  540
SPYAVPGLRA GGFMGSQVIL PLAHTLEHEE FLEVIRLEGH SLCHDEVVLS RDMYLLQLCS  600
GVDENAAGAC AQLVFAPIDE SFADDAPLLP SGFRVIPLDG KTDAPSATRT LDLASTLEVG  660
SGGTTRASSD TSSTCNTRSV LTIAFQFSYE NHLRESVAAM ARQYVRTVVA SVQRVAMAIA  720
PSRLGGQIET KNPPGSPEAH TLARWIGRSY RFHTGADLLR TDSQSTDSSL KAMWQHSDSI  780
MCCSLKAAPV FTFANQAGLD MLETTLIALQ DISLEKILDD DGRKALCTEF PKIMQQGFAY  840
LPGGVCVSSM GRPVSYEQAV AWKVLSDDDT PHCLAFMFVN WSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein